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1. Cozzini P, Fornabaio M, Marabotti A, Abraham DJ, Kellogg GE, Mozzarelli A Simple, intuitive calculations of free nergy of binding for protein ligand complexes Meeting: BIOCOMP 2002 - Year: 2002 Full text in a new tab Topic: Abstract: Missing |
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2. Marabotti A, D'Auria S, Rossi M, Facchiano AM Modelling the Three-Dimensional Structure of a Sugar Binding Protein from a Thermophilic Organism: Analysis on Stability and Sugar Binding Simulations. Meeting: BITS 2004 - Year: 2004 Full text in a new tab Topic: Unspecified Abstract: The characterization of proteins from thermophilic organisms is becoming more and more interesting for possible biotechnological applications. Recently, the complete genome of a hyper-thermophilic archaebacterium, P. horikoshii, was sequenced [1] and a sugar binding protein (Ph-SBP) was identified by means of analysis of its sequence similarity. Some preliminary experimental information are available on its binding properties and on its structural features; however, the lack of information about its 3D structure impairs the complete knowledge of its conformational properties and interactions with its ligands. Here, we present the results of the homology modelling strategy we used to predict the 3D structure of Ph-SBP, and the analysis we made on the resulting model in order to assess its reliability, with particular care to its expected thermostability features and sugar binding properties. |
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3. Marabotti A, Facchiano A Bad habits about homology Meeting: BITS 2009 - Year: 2009 Full text in a new tab Topic: Genome and Molecular Evolution Abstract: Missing |
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4. Marabotti A, Facchiano A, Aurilia V, Rioux-Dubé JF, Pézolet M, D'Auria S Cold-adapted enzymes: structure, stability and function investigated by computational methods Meeting: BITS 2009 - Year: 2009 Full text in a new tab Topic: Protein Structure and Function and Computational Proteomics Abstract: Missing |
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5. Marabotti A, Facchiano AM Critical Assessment of Side Chain Prediction (CASCP): an in-house evaluation on single-point mutants of lysozyme. Meeting: BITS 2007 - Year: 2007 Full text in a new tab Topic: Novel methodologies, algorithms and tools Abstract: Missing |
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6. Marabotti A, Festa M, D'Acierno A, Facchiano A GALT-Prot database: a database of the structural features of GALT enzyme and its mutations Meeting: BITS 2006 - Year: 2006 Full text in a new tab Topic: Miscellanea Abstract: Missing |
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7. Marabotti A, Scirè A, Staiano M, Iozzino L, Luchansky MS, Der BS, Dattelbaum JD, Tanfani F, D'Auria S Computational and experimental approaches to characterize the molecular organization and structural stability of an Arginine-binding protein from Thermotoga maritima Meeting: Proceedings of BITS 2010 Meeting - Year: 2010 Full text in a new tab Topic: Protein structure and function Abstract: Missing |